Synthetic and genetic dimers as quantification ruler for single-molecule counting with PALM

Synthetic and genetic dimers as quantification ruler for single-molecule counting with PALM

Tim N. Baldering, Marina S. Dietz, Karl Gatterdam, Christos Karathanasis, Ralph Wieneke, Robert Tampé, and Mike Heilemann

https://doi.org/10.1091/mbc.E18-10-0661

?How membrane proteins oligomerize determines their function. Super-resolution microscopy can report on protein clustering and extract quantitative molecular information. Here, we evaluate the blinking kinetics of four photoactivatable fluorescent proteins for quantitative single-molecule microscopy. We identified mEos3.2 and mMaple3 to be suitable for molecular quantification through blinking histogram analysis. We designed synthetic and genetic dimers of mEos3.2 as well as fusion proteins of monomeric and dimeric membrane proteins as reference structures, and we demonstrate their versatile use for quantitative super-resolution imaging in vitro and in situ. We further found that the blinking behavior of mEos3.2 and mMaple3 is modified by a reducing agent, offering the possibility to adjust blinking parameters according to experimental needs.