Deploy and Manage MongoDB Sharded Cluster in Amazon Elastic Kubernetes Service (Amazon EKS) using KubeDB
Overview
KubeDB is the Kubernetes Native Database Management Solution which simplifies and automates routine database tasks such as Provisioning, Monitoring, Upgrading, Patching, Scaling, Volume Expansion, Backup, Recovery, Failure detection, and Repair for various popular databases on private and public clouds. The databases that KubeDB supports are MongoDB, Elasticsearch, MySQL, MariaDB, Redis, PostgreSQL, ProxySQL, Percona XtraDB, Memcached and PgBouncer. You can find the guides to all the supported databases in?KubeDB?. In this tutorial we will deploy and manage MongoDB sharded cluster in Amazon Elastic Kubernetes Service (Amazon EKS). We will cover the following steps:
Get Cluster ID
We need the cluster ID to get the KubeDB License. To get cluster ID, we can run the following command:
$ kubectl get ns kube-system -o jsonpath='{.metadata.uid}'
fc435a61-c74b-9243-83a5-f1110ef2462c
Get License
Go to?Appscode License Server?to get the license.txt file. For this tutorial we will use KubeDB Enterprise Edition.
Install KubeDB
We will use helm to install KubeDB. Please install helm?here?if it is not already installed. Now, let’s install?KubeDB.
$ helm repo add appscode https://charts.appscode.com/stable/
$ helm repo update
$ helm search repo appscode/kubedb
NAME CHART VERSION APP VERSION DESCRIPTION
appscode/kubedb v2023.01.31 v2023.01.31 KubeDB by AppsCode - Production ready databases...
appscode/kubedb-autoscaler v0.16.0 v0.16.0 KubeDB Autoscaler by AppsCode - Autoscale KubeD...
appscode/kubedb-catalog v2023.01.31 v2023.01.31 KubeDB Catalog by AppsCode - Catalog for databa...
appscode/kubedb-community v0.24.2 v0.24.2 KubeDB Community by AppsCode - Community featur...
appscode/kubedb-crds v2023.01.31 v2023.01.31 KubeDB Custom Resource Definitions
appscode/kubedb-dashboard v0.7.0 v0.7.0 KubeDB Dashboard by AppsCode
appscode/kubedb-enterprise v0.11.2 v0.11.2 KubeDB Enterprise by AppsCode - Enterprise feat...
appscode/kubedb-grafana-dashboards v2023.01.31 v2023.01.31 A Helm chart for kubedb-grafana-dashboards by A...
appscode/kubedb-metrics v2023.01.31 v2023.01.31 KubeDB State Metrics
appscode/kubedb-ops-manager v0.18.0 v0.18.0 KubeDB Ops Manager by AppsCode - Enterprise fea...
appscode/kubedb-opscenter v2023.01.31 v2023.01.31 KubeDB Opscenter by AppsCode
appscode/kubedb-provisioner v0.31.0 v0.31.0 KubeDB Provisioner by AppsCode - Community feat...
appscode/kubedb-schema-manager v0.7.0 v0.7.0 KubeDB Schema Manager by AppsCode
appscode/kubedb-ui v2022.06.14 0.3.26 A Helm chart for Kubernetes
appscode/kubedb-ui-server v2021.12.21 v2021.12.21 A Helm chart for kubedb-ui-server by AppsCode
appscode/kubedb-webhook-server v0.7.0 v0.7.0 KubeDB Webhook Server by AppsCode
# Install KubeDB Enterprise operator chart
$ helm install kubedb appscode/kubedb \
--version v2023.01.31 \
--namespace kubedb --create-namespace \
--set kubedb-provisioner.enabled=true \
--set kubedb-ops-manager.enabled=true \
--set kubedb-autoscaler.enabled=true \
--set kubedb-dashboard.enabled=true \
--set kubedb-schema-manager.enabled=true \
--set-file global.license=/path/to/the/license.txt
Let’s verify the installation:
$ kubectl get pods --all-namespaces -l "app.kubernetes.io/instance=kubedb"
NAMESPACE NAME READY STATUS RESTARTS AGE
kubedb kubedb-kubedb-autoscaler-578b597fd9-4696c 1/1 Running 0 5m48s
kubedb kubedb-kubedb-dashboard-54cc8997c9-26tzk 1/1 Running 0 5m48s
kubedb kubedb-kubedb-ops-manager-7f497bd5bb-2qrnr 1/1 Running 0 5m48s
kubedb kubedb-kubedb-provisioner-85875fc459-wmldn 1/1 Running 0 5m48s
kubedb kubedb-kubedb-schema-manager-69c7d849d4-86jnk 1/1 Running 0 5m48s
kubedb kubedb-kubedb-webhook-server-6988b8ccf7-7gdlh 1/1 Running 0 5m48s
We can list the CRD Groups that have been registered by the operator by running the following command:
$ kubectl get crd -l app.kubernetes.io/name=kubedb
NAME CREATED AT
elasticsearchautoscalers.autoscaling.kubedb.com 2023-02-14T08:56:33Z
elasticsearchdashboards.dashboard.kubedb.com 2023-02-14T08:56:32Z
elasticsearches.kubedb.com 2023-02-14T08:56:32Z
elasticsearchopsrequests.ops.kubedb.com 2023-02-14T08:56:41Z
elasticsearchversions.catalog.kubedb.com 2023-02-14T08:50:00Z
etcds.kubedb.com 2023-02-14T08:56:41Z
etcdversions.catalog.kubedb.com 2023-02-14T08:50:00Z
kafkas.kubedb.com 2023-02-14T08:56:51Z
kafkaversions.catalog.kubedb.com 2023-02-14T08:50:01Z
mariadbautoscalers.autoscaling.kubedb.com 2023-02-14T08:56:33Z
mariadbdatabases.schema.kubedb.com 2023-02-14T08:56:37Z
mariadbopsrequests.ops.kubedb.com 2023-02-14T08:57:01Z
mariadbs.kubedb.com 2023-02-14T08:56:37Z
mariadbversions.catalog.kubedb.com 2023-02-14T08:50:02Z
memcacheds.kubedb.com 2023-02-14T08:56:43Z
memcachedversions.catalog.kubedb.com 2023-02-14T08:50:03Z
mongodbautoscalers.autoscaling.kubedb.com 2023-02-14T08:56:34Z
mongodbdatabases.schema.kubedb.com 2023-02-14T08:56:34Z
mongodbopsrequests.ops.kubedb.com 2023-02-14T08:56:45Z
mongodbs.kubedb.com 2023-02-14T08:56:35Z
mongodbversions.catalog.kubedb.com 2023-02-14T08:50:04Z
mysqlautoscalers.autoscaling.kubedb.com 2023-02-14T08:56:34Z
mysqldatabases.schema.kubedb.com 2023-02-14T08:56:33Z
mysqlopsrequests.ops.kubedb.com 2023-02-14T08:56:57Z
mysqls.kubedb.com 2023-02-14T08:56:34Z
mysqlversions.catalog.kubedb.com 2023-02-14T08:50:05Z
perconaxtradbautoscalers.autoscaling.kubedb.com 2023-02-14T08:56:34Z
perconaxtradbopsrequests.ops.kubedb.com 2023-02-14T08:57:16Z
perconaxtradbs.kubedb.com 2023-02-14T08:56:49Z
perconaxtradbversions.catalog.kubedb.com 2023-02-14T08:50:06Z
pgbouncers.kubedb.com 2023-02-14T08:56:49Z
pgbouncerversions.catalog.kubedb.com 2023-02-14T08:50:07Z
postgresautoscalers.autoscaling.kubedb.com 2023-02-14T08:56:34Z
postgresdatabases.schema.kubedb.com 2023-02-14T08:56:36Z
postgreses.kubedb.com 2023-02-14T08:56:36Z
postgresopsrequests.ops.kubedb.com 2023-02-14T08:57:08Z
postgresversions.catalog.kubedb.com 2023-02-14T08:50:08Z
proxysqlautoscalers.autoscaling.kubedb.com 2023-02-14T08:56:34Z
proxysqlopsrequests.ops.kubedb.com 2023-02-14T08:57:12Z
proxysqls.kubedb.com 2023-02-14T08:56:50Z
proxysqlversions.catalog.kubedb.com 2023-02-14T08:50:09Z
publishers.postgres.kubedb.com 2023-02-14T08:57:26Z
redisautoscalers.autoscaling.kubedb.com 2023-02-14T08:56:34Z
redises.kubedb.com 2023-02-14T08:56:50Z
redisopsrequests.ops.kubedb.com 2023-02-14T08:57:04Z
redissentinelautoscalers.autoscaling.kubedb.com 2023-02-14T08:56:34Z
redissentinelopsrequests.ops.kubedb.com 2023-02-14T08:57:19Z
redissentinels.kubedb.com 2023-02-14T08:56:51Z
redisversions.catalog.kubedb.com 2023-02-14T08:50:10Z
subscribers.postgres.kubedb.com 2023-02-14T08:57:30Z
Deploy MongoDB Sharded Cluster
We are going to Deploy MongoDB Sharded Cluster by using KubeDB. First, let’s create a Namespace in which we will deploy the database.
$ kubectl create namespace demo
namespace/demo created
Here is the yaml of the MongoDB CRO we are going to use:
apiVersion: kubedb.com/v1alpha2
kind: MongoDB
metadata:
name: mongodb-shard
namespace: demo
spec:
version: 5.0.3
shardTopology:
configServer:
replicas: 3
storage:
resources:
requests:
storage: 512Mi
storageClassName: standard
mongos:
replicas: 2
shard:
replicas: 3
shards: 2
storage:
resources:
requests:
storage: 512Mi
storageClassName: standard
terminationPolicy: WipeOut
Let’s save this yaml configuration into?mongodb-shard.yaml?Then create the above MongoDB CRO
$ kubectl apply -f mongodb-shard.yaml
mongodb.kubedb.com/mongodb-shard created
In this yaml,
Once these are handled correctly and the MongoDB object is deployed, you will see that the following objects are created:
$ kubectl get all -n demo
NAME READY STATUS RESTARTS AGE
pod/mongodb-shard-configsvr-0 1/1 Running 0 6m
pod/mongodb-shard-configsvr-1 1/1 Running 0 6m
pod/mongodb-shard-configsvr-2 1/1 Running 0 6m
pod/mongodb-shard-mongos-0 1/1 Running 0 6m
pod/mongodb-shard-mongos-1 1/1 Running 0 6m
pod/mongodb-shard-shard0-0 1/1 Running 0 6m
pod/mongodb-shard-shard0-1 1/1 Running 0 6m
pod/mongodb-shard-shard0-2 1/1 Running 0 6m
pod/mongodb-shard-shard1-0 1/1 Running 0 6m
pod/mongodb-shard-shard1-1 1/1 Running 0 6m
pod/mongodb-shard-shard1-2 1/1 Running 0 6m
NAME TYPE CLUSTER-IP EXTERNAL-IP PORT(S) AGE
service/mongodb-shard ClusterIP 10.96.245.105 <none> 27017/TCP 6m
service/mongodb-shard-configsvr-pods ClusterIP None <none> 27017/TCP 6m
service/mongodb-shard-mongos-pods ClusterIP None <none> 27017/TCP 6m
service/mongodb-shard-shard0-pods ClusterIP None <none> 27017/TCP 6m
service/mongodb-shard-shard1-pods ClusterIP None <none> 27017/TCP 6m
NAME READY AGE
statefulset.apps/mongodb-shard-configsvr 3/3 6m
statefulset.apps/mongodb-shard-mongos 2/2 6m
statefulset.apps/mongodb-shard-shard0 3/3 6m
statefulset.apps/mongodb-shard-shard1 3/3 6m
NAME TYPE VERSION AGE
appbinding.appcatalog.appscode.com/mongodb-shard kubedb.com/mongodb 5.0.3 6m
NAME VERSION STATUS AGE
mongodb.kubedb.com/mongodb-shard 5.0.3 Ready 6m
Let’s check if the database is ready to use,
$ kubectl get mongodb -n demo mongodb-shard
NAME VERSION STATUS AGE
mongodb-shard 5.0.3 Ready 6m
We have successfully deployed MongoDB shard in AWS. Now we can exec into the container to use the database.
Accessing Database Through CLI
To access the database through CLI, we have to get the credentials to access. Let’s export the credentials as environment variable to our current shell :
Export the Credentials
KubeDB will create Secret and Service for the database?mongodb-shard?that we have deployed. Let’s check them using the following commands,
$ kubectl get secret -n demo -l=app.kubernetes.io/instance=mongodb-shard
NAME TYPE DATA AGE
mongodb-shard-auth kubernetes.io/basic-auth 2 7m
mongodb-shard-key Opaque 1 7m
$ kubectl get service -n demo -l=app.kubernetes.io/instance=mongodb-shard
NAME TYPE CLUSTER-IP EXTERNAL-IP PORT(S) AGE
mongodb-shard ClusterIP 10.96.245.105 <none> 27017/TCP 7m
mongodb-shard-configsvr-pods ClusterIP None <none> 27017/TCP 7m
mongodb-shard-mongos-pods ClusterIP None <none> 27017/TCP 7m
mongodb-shard-shard0-pods ClusterIP None <none> 27017/TCP 7m
mongodb-shard-shard1-pods ClusterIP None <none> 27017/TCP 7m
Now, we are going to use?mongodb-shard-auth?to export credentials. Let’s export the?USER?and?PASSWORD?as environment variables to make further commands re-usable.
$ export USER=$(kubectl get secrets -n demo mongodb-shard-auth -o jsonpath='{.data.\username}' | base64 -d)
$ export PASSWORD=$(kubectl get secrets -n demo mongodb-shard-auth -o jsonpath='{.data.\password}' | base64 -d)
Insert Sample Data
In this section, we are going to login into our MongoDB shard pod and insert some sample data.
$ kubectl exec -it -n demo mongodb-shard-shard0-1 -- mongo admin -u $USER -p $PASSWORD
Defaulted container "mongodb" out of: mongodb, copy-config (init)
MongoDB shell version v5.0.3
connecting to: mongodb://127.0.0.1:27017/admin?compressors=disabled&gssapiServiceName=mongodb
Implicit session: session { "id" : UUID("2b11867d-9d5e-4aea-86c7-94f1fce63a16") }
MongoDB server version: 5.0.3
shard0:PRIMARY> show dbs
admin 0.000GB
config 0.001GB
kubedb-system 0.000GB
local 0.001GB
shard0:PRIMARY> use musicdb
switched to db musicdb
shard0:PRIMARY> db.songs.insert({"name":"Five Hundred Miles"});
WriteResult({ "nInserted" : 1 })
shard0:PRIMARY> db.songs.find().pretty()
{
"_id" : ObjectId("63ec741ae6d320dafd14e938"),
"name" : "Five Hundred Miles"
}
shard0:PRIMARY> exit
bye
We’ve successfully inserted some sample data to our database. More information about Run & Manage MongoDB on Kubernetes can be found?HERE
Horizontal Scaling of MongoDB Sharded Cluster
Horizontal Scale Up
Here, we are going to scale up the number of MongoDB shard and also their replicas to meet the desired number of replicas. Before applying Horizontal Scaling, let’s check the current number of MongoDB shard and their replicas,
$ kubectl get mongodb -n demo mongodb-shard -o json | jq '.spec.shardTopology.shard.shards'
2
$ kubectl get mongodb -n demo mongodb-shard -o json | jq '.spec.shardTopology.shard.replicas'
3
Create MongoDBOpsRequest
In order to scale up, we have to create a?MongoDBOpsRequest?CR with our desired replicas. Let’s create it using this following yaml,
apiVersion: ops.kubedb.com/v1alpha1
kind: MongoDBOpsRequest
metadata:
name: horizontal-scale-up
namespace: demo
spec:
type: HorizontalScaling
databaseRef:
name: mongodb-shard
horizontalScaling:
shard:
shards: 3
replicas: 4
In this yaml,
Let’s save this yaml configuration into?horizontal-scale-up.yaml?and apply it,
$ kubectl apply -f horizontal-scale-up.yaml
mongodbopsrequest.ops.kubedb.com/horizontal-scale-up created
Let’s wait for?MongoDBOpsRequest?STATUS?to be Successful. Run the following command to watch?MongoDBOpsRequest?CR,
$ watch kubectl get mongodbopsrequest -n demo
NAME TYPE STATUS AGE
horizontal-scale-up HorizontalScaling Successful 2m52s
From the above output we can see that the?MongoDBOpsRequest?has succeeded. Now, we are going to verify the number of shard and their replicas,
$ kubectl get mongodb -n demo mongodb-shard -o json | jq '.spec.shardTopology.shard.shards'
3
$ kubectl get mongodb -n demo mongodb-shard -o json | jq '.spec.shardTopology.shard.replicas'
4
From all the above outputs we can see that the number of shards is now increased to 3 and also, their replicas increased to 4. That means we have successfully scaled up the number of shards and their replicas.
Horizontal Scale Down
Now, we are going to scale down the number of MongoDB shard and also their replicas to meet the desired number of replicas.
Create MongoDBOpsRequest
In order to scale down, again we need to create a?MongoDBOpsRequest?CR with our desired replicas. Let’s create it using this following yaml,
apiVersion: ops.kubedb.com/v1alpha1
kind: MongoDBOpsRequest
metadata:
name: horizontal-scale-down
namespace: demo
spec:
type: HorizontalScaling
databaseRef:
name: mongodb-shard
horizontalScaling:
shard:
shards: 2
replicas: 3
In this yaml,
Let’s save this yaml configuration into?horizontal-scale-down.yaml?and apply it,
$ kubectl apply -f horizontal-scale-down.yaml
mongodbopsrequest.ops.kubedb.com/horizontal-scale-down created
Let’s wait for?MongoDBOpsRequest?STATUS?to be Successful. Run the following command to watch?MongoDBOpsRequest?CR,
$ watch kubectl get mongodbopsrequest -n demo
NAME TYPE STATUS AGE
horizontal-scale-down HorizontalScaling Successful 2m52s
From the above output we can see that the?MongoDBOpsRequest?has succeeded. Now, we are going to verify the number of shard and their replicas,
$ kubectl get mongodb -n demo mongodb-shard -o json | jq '.spec.shardTopology.shard.shards'
2
$ kubectl get mongodb -n demo mongodb-shard -o json | jq '.spec.shardTopology.shard.replicas'
3
From all the above outputs we can see that the number of shards is now decreased to 2 and also, their replicas decreased to 3. That means we have successfully scaled down the number of shards and their replicas.
Vetical Scaling of MongoDB Sharded Cluster
We are going to scale up the current cpu resource of the MongoDB sharded cluster by applying Vertical Scaling. Before applying it, let’s check the current resources,
$ kubectl get pod -n demo mongodb-shard-shard0-0 -o json | jq '.spec.containers[].resources'
{
"limits": {
"memory": "1Gi"
},
"requests": {
"cpu": "500m",
"memory": "1Gi"
}
}
Vertical Scale Up
Create MongoDBOpsRequest
In order to update the resources of the cluster, we have to create a?MongoDBOpsRequest?CR with our desired resources. Let’s create it using this following yaml,
apiVersion: ops.kubedb.com/v1alpha1
kind: MongoDBOpsRequest
metadata:
name: vertical-scale-up
namespace: demo
spec:
type: VerticalScaling
databaseRef:
name: mongodb-shard
verticalScaling:
shard:
requests:
memory: "1100Mi"
cpu: "0.55"
limits:
memory: "1100Mi"
cpu: "0.55"
In this yaml,
Let’s save this yaml configuration into?vertical-scale-up.yaml?and apply it,
$ kubectl apply -f vertical-scale-up.yaml
mongodbopsrequest.ops.kubedb.com/vertical-scale-up created
Let’s wait for?MongoDBOpsRequest?STATUS?to be Successful. Run the following command to watch?MongoDBOpsRequest?CR,
$ kubectl get mongodbopsrequest -n demo
NAME TYPE STATUS AGE
vertical-scale-up VerticalScaling Successful 4m33s
We can see from the above output that the?MongoDBOpsRequest?has succeeded. Now, we are going to verify from one of the Pod yaml whether the resources of the database has updated to meet up the desired state. Let’s check with the following command,
$ kubectl get pod -n demo mongodb-shard-shard0-0 -o json | jq '.spec.containers[].resources'
{
"limits": {
"cpu": "550m",
"memory": "1100Mi"
},
"requests": {
"cpu": "550m",
"memory": "1100Mi"
}
}
The above output verifies that we have successfully scaled up the resources of the MongoDB sharded cluster.
Vertical Scale Down
Create MongoDBOpsRequest
In order to update the resources of the database, we have to create a?MongoDBOpsRequest?CR with our desired resources. Let’s create it using this following yaml,
apiVersion: ops.kubedb.com/v1alpha1
kind: MongoDBOpsRequest
metadata:
name: vertical-scale-down
namespace: demo
spec:
type: VerticalScaling
databaseRef:
name: mongodb-shard
verticalScaling:
shard:
requests:
memory: "1Gi"
cpu: "0.5"
limits:
memory: "1Gi"
cpu: "0.5"
In this yaml,
Let’s save this yaml configuration into?vertical-scale-down.yaml?and apply it,
$ kubectl apply -f vertical-scale-down.yaml
mongodbopsrequest.ops.kubedb.com/vertical-scale-down created
Let’s wait for?MongoDBOpsRequest?STATUS?to be Successful. Run the following command to watch?MongoDBOpsRequest?CR,
$ kubectl get mongodbopsrequest -n demo
NAME TYPE STATUS AGE
vertical-scale-down VerticalScaling Successful 3m
We can see from the above output that the?MongoDBOpsRequest?has succeeded. Now, we are going to verify from one of the Pod yaml whether the resources of the database has updated to meet up the desired state. Let’s check with the following command,
$ kubectl get pod -n demo mongodb-shard-shard0-0 -o json | jq '.spec.containers[].resources'
{
"limits": {
"cpu": "500m",
"memory": "1Gi"
},
"requests": {
"cpu": "500m",
"memory": "1Gi"
}
}
The above output verifies that we have successfully scaled down the resources of the MongoDB sharded cluster.
If you want to learn more about Production-Grade MongoDB you can have a look into that playlist below:
PS: This article was initially published on?ByteBuilders Blog
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