Any reason to stay in Human Genetic societies as cytogeneticists?

Thomas Liehr

Jena University Hospital, Friedrich Schiller University, Institute of Human Genetics, Jena, Germany

When joining the European (ESHG -?https://www.eshg.org/home) and our national Society of Human Genetics in Germany (Deutsche Gesellschaft für Humangenetik – GfH -?https://www.gfhev.de/) about 25 years ago, they both represented and covered the whole field of Human Genetics. This covers besides clinical genetics, syndromology, genetic counselling, chromosomes (cytogenetics and molecular cytogenetics), nuclear architecture, DNA (cloning, sequencing, imprinting, etc.), also new methodological developments. Meetings organized by these societies were not only oriented to diagnostics, research and an industrial exhibition, but also to patients; the latter was nicely highlighted by the fact that many patient-support-groups were present at these meetings.

For the past 10 years (or even more…), such meetings do not include any (molecular) cytogenetic sessions any more. At the same time, there are no patient support groups coming to these meetings! Especially the latter point is alarming for me as: For whom we do our work? – For patients! And, if the representatives of patients with genetic disorders see no reason to come to our conferences any more, something must go severely wrong in our field.

If we analyze what these meetings are about nowadays in terms of research content, it is about all possible variants of DNA-oriented, mainly sequencing approaches; it is about high-quality research on rare diseases and single gene mutations; more precisely, the technical progress of sequencing machines seems to be the main topic, yet. Chromosomes are declared not to be of interest any more, even though the recognition of topologically associating domains (TADs) and the introduction of optical genomic mapping were small signs of hope, that:

  • it might be coming back to the attention of specialists that the human genome is more than (not one but) 46 long DNA-strands with possibly disease-causing genes on them.
  • that there may be more than just assigning a variant in one of 5 (arbitrary) classes;
  • and that in 70% of cases a genetic disease is multifactorially caused and/or by a genomic imbalance of many megabase pairs.

Unfortunately, there is more and more the attitude in the field, that each and every genetic case can be solved by sequencing alone; I know (I think, we all know…) of cases where cytogenetic results were ignored and a single gene SNP was incorrectly blamed to possibly cause the patients problems. Such problems, however, are practically no topic on Human Genetic meetings, as there are no cytogenetic sessions any more.

Overall, there are and were no attempts of GfH or ESHG to strengthen (molecular) cytogenetics. For Germany I know that all private labs doing postnatal / fertility diagnostics need cytogeneticists, like tumorgenetic labs do as well. Almost all University-based Human Genetic institutes in Germany stopped education of cytogeneticists. Thus, nowadays German private labs have to educate new coworkers how to do banding cytogenetics, as these are not available from universities; such education cannot be considered the same as it was before at universities. Even worse – we know from countries like Australia, USA or Canada, that Human Genetics was absorbed by Pathology, there. Thus, the fact that new tumorgenetic labs have been and are repeatedly opened by Pathologists in Germany during the last years, and that they are looking for cytogeneticist, should alarm national societies and lead them to re-strengthen this field.

Maybe more 'chromosome people' reading this have the same feeling about the development of our national and international Human Genetic societies, and may write corresponding letters of concern to them.

DR MUHAMMAD ISRAR NASIR

Clinical Laboratory Geneticist, Ph.D( Genetics), Affiliated ErCLG Mol. Genetics, From European Board of Medical Genetics (EBMG)

1 年

Cytogenetics. Amazing filed. Whole Genome Analysis @ low resolution but very powerful at very low cost

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Thomas Liehr

Wissenschaftlicher Mitarbeiter mit akademischem Abschluss bei Universit?tsklinikum Jena

1 年

Thanks for positive feedback! Please also see https://www.qeios.com/read/VY79EZ - there is a letter template in suppl. of the related article, which may be used to be sent to Human Genetic societies - please use and distribute in your network. Also you may do a review of the paper on Qeios. ??

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Dr. Sonal Bakshi

Assistant Professor [2010-2025], Institute of Science, Nirma University

1 年

Fully agree Dr. Liehr! Would like to share my observations. I am no longer working in the cytogenetics lab since 13 years now, but am teaching cytogenetics to Masters students as part of a course on Human Genetics. The reason for less consideration on Banding Cytogenetics seems to be this; it requires human skill which comes with experience and cannot be fully automated like other genetic analysis methods. Skilled workforce is not generated at a pace comparable to sequencing methods. It is also considered less glorious, and it is not given due importance simply because those in power don't understand it fully. The lack of knowledge and respect for this branch is also widely reflected in papers we review! No basic norms of ISCN followed when describing chromosome findings. The AGT, USA seems to have done good justice to the field I have observed. No technique would replace previous technique, but will compliment. Lack of expertise often leads to ignoring the area altogether I believe. Living legend in the field of chromosomes, Prof. Sen Pathak, MD Anderson Cancer center, can identify chromosomes of various animal species too! Will this be a part of history? We all should be worried! Thanks for this statement.

Isabel Marques Carreira

Full Professor na Universidade de Coimbra

1 年

Thank you Prof T Liehr for sharing these thoughts! Indeed this is very worrying and it is time that every geneticist working in diagnosis speaks up and alert for this enormous problem

Krasikova Alla

Head of Laboratory | Associate Professor | Researcher in the field of cell nucleus biology ?? and chromosome function ??

1 年

Similarly, in many whole-genomic such as Hi-C studies, verification of the results by chromatin imaging is highly desirable. Without FISH or other in situ imaging techniques, misinterpretation of the findings is common

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