??AI for Maize: Revolutionizing Crop Yield Prediction in Breeding ??

??AI for Maize: Revolutionizing Crop Yield Prediction in Breeding ??

Improving yield prediction is not easy, as traditional models struggle to generalize across different conditions and make sense of complex, multi-modal data.

One of the latest researches of Purdue University, United States ???? investigates the prediction of maize grain yield using deep learning models that integrate multi-modal remote sensing data, including hyperspectral imagery and LiDAR point clouds, alongside weather and genetic data.

The study focuses on improving prediction accuracy and interpretability by utilising attention mechanisms within the models.


(A) Geographic location of maize experiments at Purdue University’s Agronomy Center for Research and Education. (B) Experimental plot layouts for GxE plant breeding experiments in 2020 and 2021. Check plots indicated in red. Source: Toledo et al., 2024

Role of AI

AI plays a critical role in this research through the application of advanced deep learning techniques. Specifically:

  1. LSTM Networks: These recurrent neural networks are designed to handle time series data from RS inputs throughout the growing season. They capture the temporal dependencies in crop development and enable accurate predictions.
  2. Attention Mechanisms: Attention mechanisms are employed to improve both the accuracy and interpretability of the models. They assign importance to different RS data inputs at various growth stages, identifying critical periods in maize development that significantly influence yield.
  3. Multi-modal Deep Learning: The AI model assimilates inputs from heterogeneous data streams—hyperspectral imagery, LiDAR point clouds, and environmental data (e.g., weather)—to generate accurate yield forecasts. The combination of multiple modalities enhances the model's ability to capture the complex relationships between the environment, genetics, and crop growth.


(A) Genetic variation based on PCA (B) Ground reference data with and without check data. Source: Toledo et al., 2024


UAV platform with APX (A), RGB (B), LiDAR (C) and Hyperspectral (D) sensors.

Core Numerical Insights

  • The models achieved R2 values ranging from 0.82 to 0.96, indicating high accuracy in predicting maize grain yields.
  • The multi-modal architecture performed best, with R2 values of 0.96 and RMSE of 3.21 tons per hectare, demonstrating superior performance over traditional vanilla LSTM models.
  • Attention mechanisms improved model interpretability by showing that LiDAR data contributed most during early growth stages, while hyperspectral data had higher importance during mid- and late-season stages.
  • Four different prediction scenarios were evaluated, with the inclusion of all RS dates providing the most accurate predictions, though reduced time-step scenarios still yielded robust results (e.g., R2 values over 0.8).


Data collection specifications. Source: Toledo et al., 2024

This study highlights the potential of AI-driven, multi-modal RS models to improve yield predictions and support more informed decision-making in plant breeding and crop management.

The research concludes that multi-modal remote sensing, integrated with deep learning models and attention mechanisms, can provide accurate and interpretable predictions of maize grain yield. The insights gained from the attention weights can inform data collection strategies and enhance our understanding of the factors influencing yield.        


Dates of remote sensing data acquisition in 2020 and 2021. Source: Toledo et al., 2024


Remote sensing input features for time series analysis in models. Source: Toledo et al., 2024


Accumulated values of weather variables through the growing season. Source: Toledo et al., 2024


Stacked LSTM-based networks explored for prediction of maize yield (?yVNIR+LiDAR)y^VNIR+LiDAR). Source: Toledo et al., 2024

In the figure above: (A) Vanilla stacked LSTM with early fusion of both concatenated features from VNIR, LiDAR and weather data. (B) LSTM with attention mechanism, with early fusion of the modalities. (C) Multi-modal network with separate networks for each RS modality concatenated with weather, adding a late fusion module.


Average values of the attention weights in the time domain in (A) LiDAR and (B) hyperspectral modalities. Source: Toledo et al., 2024

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Avinash Chandra Pandey

Crop Improvement Researcher

4 个月

Maryna Kuzmenko, Ph.D ???? This was a good presentation Under a flag of 'Precision Agriculture', the crop simulation model collects different data sets from sowing to crop harvest where foliage growth, canopy cover, fruiting bodies indexes, the phenotypic impact of biotic and abiotic stress, then local weather data during crop duration and also previous accumulated data sets, etc. These all under AI/ML complex process can predict expected plot yield. This is evolving but it will be common practice in the near future. Here agencies like Petiole Pro and dedicated team leaders like Maryna Kuzmenko, Ph.D ???? play a significant role in such projects. These individual data from different local plots can help policymakers decide the market price and future strategy planning. ??

Abdul Manan

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4 个月

Interesting

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4 个月

Full text of the research is available via the link: Aviles Toledo C, Crawford MM and Tuinstra MR (2024) Integrating multi-modal remote sensing, deep learning, and attention mechanisms for yield prediction in plant breeding experiments.?Front. Plant Sci.?15:1408047. doi: 10.3389/fpls.2024.1408047

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