Over the weekend, I unearthed this engaging paper just published in the ????????????? that explores the transformative potential of artificial intelligence (AI) and machine learning (ML) in noncoding RNA (ncRNA) research. ???????????????? ????????????: ??Role of ncRNAs: The manuscript emphasizes that ncRNAs, which constitute the majority of the human transcriptome, are crucial in regulating genome organization and gene expression at multiple levels, including epigenetic, transcriptional, and post-transcriptional. ??Biomarker Potential: ncRNAs have significant potential as next-generation biomarkers due to their dynamic expression profiles, which can reflect a patient's molecular state and provide insights into disease mechanisms. ??Challenges in Translation: Despite advancements in ncRNA research, translating these findings into clinical practice has been limited by technical and data analysis challenges. Traditional methods often overlook complex interactions between ncRNAs and clinical outcomes. ??Machine Learning Applications: The manuscript highlights the promising role of ML techniques in addressing the biological complexity of ncRNAs. These methods can effectively analyze large, high-dimensional datasets, identifying patterns and relationships that traditional statistical methods might overlook, thereby advancing our understanding of ncRNAs. ??Examples of ML in ncRNA Research: The manuscript provides several examples of ML being successfully applied to identify ncRNA biomarkers, develop diagnostic classifiers, and understand disease mechanisms. For instance, ML models have been used to predict pulmonary arterial hypertension and colorectal cancer prognosis. ??Ethical Considerations: The use of AI/ML in healthcare raises ethical concerns, including data privacy, algorithmic bias, and the need for transparency and trustworthiness in AI models. ??Future Directions: The manuscript underscores the need for collaborative efforts between academia and industry to advance the development of clinically applicable molecular tests. It also suggests that integrating ncRNA data with electronic health records and other omic data (multi-omic strategies) could significantly enhance the clinical utility of ncRNA-based biomarkers. Hope you enjoy it as much as I did! #biotechnology #AI #clinicalresearch #biomarkers https://lnkd.in/dc_EauUP
Elena Sinclair ??的动态
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How AI is Revolutionizing Biological Data Analysis In today's data-driven world, the amount of biological information being generated is growing exponentially. From DNA sequencing to high-throughput screening, researchers are collecting vast troves of data on genes, proteins, and metabolites. However, extracting meaningful insights from this deluge of information is a major challenge. Researchers are increasingly turning to AI and machine learning techniques to uncover hidden patterns and relationships in complex biological datasets. By training algorithms on large datasets, AI models can learn to predict disease risk, identify drug targets, and even design new therapeutic molecules. One exciting application of AI in biology is multi-omics data integration. Multi-omics datasets combine information from different omics technologies (Genomics, Transcriptomics, Proteomics & Metabolomics) to provide a more comprehensive view of biological systems. However, integrating these heterogeneous data types is a major computational challenge where AI is proving to be a game-changer. By leveraging techniques like deep learning, researchers can train models to find non-linear relationships across multi-omics datasets. For example, a deep neural network could learn to predict a patient's response to a drug based on their genomic, transcriptomic, and proteomic profiles. Moreover, AI is enabling the discovery of novel biomarkers and therapeutic targets. By scanning multi-omics datasets for patterns associated with disease, AI models can identify previously unknown molecules that play a key role in pathogenesis. These insights could lead to the development of more precise diagnostics and targeted therapies. The convergence of AI and multi-omics is poised to accelerate the pace of biomedical discovery and transform the way we understand and treat disease. Read this article: CardiaTec Biosciences, a Cambridge University spinout, is leveraging artificial intelligence (AI) to revolutionize drug discovery for cardiovascular diseases (CVD), which is the leading cause of death globally. With a recent $6.5 million seed funding, the company is building the "largest human heart tissue-multi-omics dataset" by partnering with 65 hospitals to collect human heart tissue samples. This multi-omics approach allows CardiaTec to integrate genetic, epigenetic, and protein data, enabling AI-driven insights into the mechanisms of CVD. By focusing on this underserved area—where only 3% of active AI companies are targeting—CardiaTec aims to identify novel therapeutic targets and accelerate the development of effective drug candidates, positioning itself at the forefront of AI in pharmaceutical innovation. #AI #Pharma #LifeSciences
Heart disease is the world's biggest killer — this Cambridge Uni spinout is using AI to find new treatments | TechCrunch
https://techcrunch.com
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Investigators from Mass General Brigham and Beth Israel Deaconess Medical Center (BIDMC) have developed an artificial intelligence (AI) tool known as EVOLVEpro that may represent a leap forward in protein engineering. In a paper published in Science, the research team demonstrates the tool's ability to make proteins more stable, precise, and efficient by applying the model to engineer six proteins with different applications. "The power of a tool like this is that we're not restricted by evolution. Using AI, we can choose to optimize a protein to be better in whatever way is needed," said co-senior author Omar Abudayyeh, Ph.D., an investigator at the Gene and Cell Therapy Institute at Mass General Brigham and Engineering in Medicine Division in the Department of Medicine at Brigham and Women's Hospital. "We can make a protein that's better, faster, stronger. We can design it to be more efficient at binding to a target to improve a therapy or improve its function. If we can measure it, we can improve upon it." The concept of protein engineering is not new, but the emergence of AI and large language models is beginning to revolutionize the field. Protein language models (PLMs) can learn the "grammar" of proteins, reading protein sequences from across large genomic databases and offering suggestions that can improve proteins in ways that a scientist specifies. Much like new LLMs, EVOLVEpro acts as a layer on top of previous models, which can reason and provide more thought before responding.
AI tool can engineer 'better, faster, stronger' proteins
phys.org
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Revolutionizing Disease Diagnosis with AI: DeepMSProfiler ?? Untargeted metabolomic analysis using mass spectrometry is like having a powerful magnifying glass to examine the intricate metabolic landscape of diseases. However, deciphering the massive amounts of data it generates has been a major roadblock in its clinical use. But now, there's a breakthrough! ?? Researchers have developed DeepMSProfiler, an AI-powered tool that streamlines the analysis of raw metabolic signals, making it more accurate and reliable than ever before. In a study involving 859 human serum samples, DeepMSProfiler successfully distinguished between lung adenocarcinoma, benign lung nodules, and healthy individuals with remarkable accuracy (AUC 0.99). It even detected early-stage lung cancer with impressive precision! ?? This innovative method not only overcomes challenges like inter-hospital variability and the presence of unidentified metabolites but also provides valuable insights into disease mechanisms. By revealing disease-related metabolite-protein networks, it opens doors for discovering new therapeutic targets. ?? DeepMSProfiler is a game-changer in the field of metabolomics, offering a straightforward and reliable approach for disease diagnosis and understanding the underlying mechanisms. This could lead to earlier detection, more effective treatments, and ultimately, improved patient outcomes. ?? #AI #Metabolomics #DeepLearning #DiseaseDiagnosis #PrecisionMedicine #Biotechnology #Innovation https://lnkd.in/eds5GMEb
An end-to-end deep learning method for mass spectrometry data analysis to reveal disease-specific metabolic profiles - Nature Communications
nature.com
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?? The Future of Multiomics ?? Really interesting read on the future of Multiomics. Here’s what industry leaders predict for 2025: ?? Precision Medicine & Clinical Impact Dr. Madhuri Hegde (Revvity) highlights how multiomics is revolutionizing rare disease diagnosis, with projects like the 100,000 Genomes Project setting new standards. ?? Direct Molecular Analysis at Scale Oxford Nanopore Technologies’s CEO, Dr. Gordon Sanghera, sees a future where large-scale genome studies integrate direct RNA and epigenome sequencing, providing richer insights into human biology. ?? Spatial Biology & AI-Powered Discovery Darius Fugere (Singular Genomics) predicts that in situ sequencing will enhance our understanding of complex cellular interactions, while AI accelerates biomarker discovery. ?? The AI & Multiomics Revolution Christian Henry (PacBio) emphasizes that combining multiomics with AI will unlock deeper insights into diseases like cancer and rare disorders, driving personalized medicine forward. ?? Single-Cell Multiomics & AI-Driven Insights Dr Charles Gawad (BioSkryb Genomics) highlights how sequencing improvements and long-read technologies will allow us to analyze genomic, transcriptomic, and epigenomic changes at a single-cell level, providing an unprecedented view of biology. AI will be critical in integrating these complex data layers. ?? Scalable Analysis & Infrastructure Needs Matt Newman (DNAnexus) emphasizes that multiomics research requires new analytical models—current tools often analyze one data type at a time. The future will see purpose-built AI-powered platforms and federated computing to process large-scale, multiomic datasets holistically. ?? Network Integration & Clinical Application Dr. Gary Patti (Panome Bio) sees multiomics driving clinical breakthroughs, especially in complex diseases. Mapping genes, proteins, and metabolites onto shared networks will pinpoint actionable disease pathways, enhancing precision medicine. ?? Liquid Biopsies & Personalized Medicine Dr. Joe Lennerz (BostonGene) highlights how multi-analyte liquid biopsies (cfDNA, RNA, proteins, metabolites) are transforming early disease detection and treatment monitoring, particularly in oncology. AI-driven multiomic analysis will be crucial for predictive disease models. ??Challenges Ahead? While the potential is enormous, hurdles like data storage, integration, and standardization remain. But with rapid advancements, 2025 could be a breakthrough year for multiomics! What are your thoughts on the future of multiomics? ?? Let’s discuss in the comments! ?? #Multiomics #Genomics #AIinHealthcare #PrecisionMedicine #BiotechInnovation #FutureOfMedicine
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?? Breakthrough in Alopecia Areata Diagnosis! ?? A recent study published in BMC Medical Informatics and Decision Making has identified three pivotal genes that serve as diagnostic markers for Alopecia Areata (AA), a common autoimmune-related hair loss condition. By harnessing advanced machine learning and bioinformatics, researchers have enhanced the accuracy of AA diagnosis, paving the way for potential targeted therapies. Key Highlights: - High Predictive Accuracy: These hub genes provide a reliable tool for early detection of AA. - Implications for Treatment: Understanding these genetic markers could lead to personalized therapies aimed at modulating immune responses. - Broader Applications: The methodology could be applied to uncover biomarkers in other autoimmune diseases. This discovery not only refines diagnostic processes but also opens new avenues for effective treatment options. Health professionals are encouraged to integrate these findings into their protocols, ultimately improving patient outcomes. Explore more about this groundbreaking research! ?? #AlopeciaAreata #AutoimmuneDiseases #ClinicalResearches #GeneticResearch #HealthcareInnovation #MachineLearning #Publications #RegulatoryAgencies #MarketAccess #MarketAccessToday
Researchers Identify Trio of Genes as Diagnostic Markers for Alopecia Areata
https://marketaccesstoday.com
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AI and the Future of Genomics: Transforming Standards for Healthcare Innovation At Hidalga Technologies, we’re always inspired by efforts to push the boundaries of healthcare technology, which is why the latest initiative from National Institute of Standards and Technology (NIST) caught our attention. NIST is working to leverage AI and machine learning to create advanced genomics and proteomics standards, and the potential impact on healthcare is enormous. https://lnkd.in/gjB8F8xp Here’s what makes this so exciting: ?? Better Genomics Coverage: Current standards capture only 80-90% of the genome and less than 20% of the proteome. By using AI to analyze billions of data points, NIST aims to expand coverage to over 99%. This could provide critical insights into genetic loci tied to immune and neurological systems. ?? Trust in AI: NIST is tackling two big challenges—uncertainty analysis and explainability—making sure AI outputs are both reliable and understandable. This step is crucial for turning groundbreaking research into real-world clinical applications. ?? Real-World Impact: From cancer therapeutics to diagnosing complex disorders, expanding genomic and proteomic data coverage will open new doors for research and develop projects for us and further improve patient care delivery. As we strive to support clinics through our own technology, it’s exciting to see how initiatives like NIST’s are setting the stage for even greater healthcare breakthroughs. What excites you most about AI’s role in genomics and proteomics? Join the conversation! #HealthTech #AIinHealthcare #CancerGenomics #Innovation #HealthcareLeadership #OncologyCare #PatientFirst #HealthcareInnovation #DigitalHealth
Trusted AI framework for a new class of Standard Reference Materials and Data with exquisitely characterized uncertainty for billions of properties
nist.gov
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This article from Gene Online discusses how precision medicine is revolutionizing healthcare by combining genetic information and AI. Precision medicine aims to provide personalized treatments based on an individual's genetic makeup, lifestyle, and environment. Key points include: - Genetic testing enables the identification of disease risks and tailored treatment plans. - AI algorithms analyze vast amounts of genetic and clinical data to predict disease outcomes and suggest optimal therapies. - Pharmacogenomics helps determine how patients will respond to specific medications based on their genetic profile. - Precision medicine is particularly impactful in cancer treatment, allowing for targeted therapies based on tumor genetics. - The integration of wearable devices and AI enhances real-time health monitoring and personalized interventions. Challenges in implementing precision medicine include data privacy concerns, the need for standardization, and ensuring equitable access to these advanced technologies. Despite these hurdles, precision medicine holds great promise for improving patient outcomes and transforming healthcare delivery. https://lnkd.in/eej67vFy #healthcare #healthcareinnovation #healthcareit #healthcareai #ai #genai #generativeai #llm #bigdata #ml #llm #eml #nlp #PatientCare #PatientOutcomes #PrecisionMedicine
Precision Medicine: Transforming Healthcare Through Genetics and AI - GeneOnline News
geneonline.com
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Could AI Be the Key to Unleashing the Full Potential of RNA? ?? Nobel laureate Dr. Drew Weissman and engineer Daeyeon Lee certainly think so, and they're ready to prove it! According to a recent report by Live Science, both these luminaries are on the cusp of launching a groundbreaking RNA research center. Their vision? To harness Artificial Intelligence for unravelling the marvels of RNA, potentially bringing about massive advances in genetic medicine!?? Dr. Weissman confidently declares: 'Any protein you can imagine, it can deliver'. The implications are startling - could we be witnessing an extraordinary leap forward in executing precision medicine?! Want more fascinating insights into this development? Dive into our full article right here ?? [https://lnkd.in/dUiJbaet) But hey - what's science without application? Is your enterprise looking for ways to leapfrog competition and stay innovative in this rapidly evolving landscape? If yes, let's talk! Get onboard my team who shall help accelerate your journey with custom-fit AI solutions. Book your slot today ? [https://lnkd.in/drmADhEj) Europe or US expansion on mind ?? ? Leverage my global corporate development network with 160K+ decision-makers across industries & continents. Together we can make your expansion dreams come true! ?? #AI #Technology #Innovation #RNAResearch #RNAandAI #ArtificialIntelligence #GeneticMedicine #NobelLaureate #PrecisionMedicine #BusinessDevelopment
'Any protein you can imagine, it can deliver': AI will help discover the next breakthrough in RNA, says Nobel Prize winner Dr. Drew Weissman
livescience.com
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Could AI Be the Key to Unleashing the Full Potential of RNA? ?? Nobel laureate Dr. Drew Weissman and engineer Daeyeon Lee certainly think so, and they're ready to prove it! According to a recent report by Live Science, both these luminaries are on the cusp of launching a groundbreaking RNA research center. Their vision? To harness Artificial Intelligence for unravelling the marvels of RNA, potentially bringing about massive advances in genetic medicine!?? Dr. Weissman confidently declares: 'Any protein you can imagine, it can deliver'. The implications are startling - could we be witnessing an extraordinary leap forward in executing precision medicine?! Want more fascinating insights into this development? Dive into our full article right here ?? [https://lnkd.in/dPRGh6ax) But hey - what's science without application? Is your enterprise looking for ways to leapfrog competition and stay innovative in this rapidly evolving landscape? If yes, let's talk! Get onboard my team who shall help accelerate your journey with custom-fit AI solutions. Book your slot today ? [https://lnkd.in/d-nMW_Vy) Europe or US expansion on mind ?? ? Leverage my global corporate development network with 160K+ decision-makers across industries & continents. Together we can make your expansion dreams come true! ?? #AI #Technology #Innovation #RNAResearch #RNAandAI #ArtificialIntelligence #GeneticMedicine #NobelLaureate #PrecisionMedicine #BusinessDevelopment
'Any protein you can imagine, it can deliver': AI will help discover the next breakthrough in RNA, says Nobel Prize winner Dr. Drew Weissman
livescience.com
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