We have been making bioinformatics tools more accessible via web interface for more than a decade. If you are or know someone who is in need of fast deployment of your tool to the world in a nice interface or just of a nice to use internal tool, please spread the word.
Oak Bioinformatics LLC
生物技术
Fairfax，Virginia 545 位关注者
We take care of the computer side, so that you can focus on what you love, the biology side.
关于我们
Welcome to Oak Bioinformatics. Our mission is to help the biological sciences community with bioinformatics tools. Our strategic focus in helping the community is to be a bridge for the academic and industrial biological sciences communities to today’s powerful computational resources and bioinformatics tools so that they can harness the power of bioinformatics. With this bridging role, we will be able to facilitate the synergy of biology, bioinformatics, and information technology. We have been helping our clients with these mission goals, which resulted in their publication in major scientific journals as well as their being awarded with national research grants. I hope that we will have an opportunity to help your organization for success.
- 网站
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https://oakbioinformatics.com
Oak Bioinformatics LLC的外部链接
- 所属行业
- 生物技术
- 规模
- 1 人
- 总部
- Fairfax，Virginia
- 类型
- 私人持股
- 创立
- 2020
- 领域
- bioinformatics、genomics、cloud、visualization、web server和big data
地点
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主要
获取路线
9480 Main St
1139
US，Virginia，Fairfax，22031
Oak Bioinformatics LLC员工
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Ryangguk Kim
Founder and CEO of Oak Bioinformatics LLC. We take care of the computer side so that you can focus on what you love, the biology side.
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Tanushka Raghuvanshi
Demonstrator || MSc Bioinformatics || University of Glasgow
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Meet Hindocha
Bioinformatics Intern
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Aleksandra Wiszowaty
Intern at Oak Bioinformatics, LLC
动态
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OakVar has just added a new test framework for module developers. One function in your module script and OakVar will take care of the testing pipeline. Check out documentation on this at https://lnkd.in/enGcqdvN.
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We have been making bioinformatics tool websites for over a decade. Our clients include Johns Hopkins University, MD Anderson Cancer Center, and the NIH. If you are looking for a quick way to offer your bioinformatics tool to the world via an easy-to-use web interface, please feel free to contact us here or at [email protected].
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OakVar has added yet another cancer biology module - Database of Curated Mutations (DoCM)! DoCM is a database with a curated set of somatic variants with established relevance to cancer biology. Congratulations Aleksandra Wiszowaty! Try DoCM with `ov module install docm` and `ov run -a docm`.
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Another win for OakVar in supporting genomic research, with the addition of the dbGaP module!
dbGaP is a database on the interaction between genotypes and phenotypes. We are excited to provide dbGaP overview data through OakVar. Great work Gehad Kamel! Install the module with `ov module install dbgap` and use it with `ov run -a dbgap`.
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dbGaP is a database on the interaction between genotypes and phenotypes. We are excited to provide dbGaP overview data through OakVar. Great work Gehad Kamel! Install the module with `ov module install dbgap` and use it with `ov run -a dbgap`.
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VRS Computed Identifiers are globally unique identifiers for genomic variants, developed by the Global Alliance for Genomics & Health. OakVar can now produce the VRS Computed Identifiers of input variants, thanks to `vrs_id` annotation module. Great work Martin Stoves! This is yet another addition to OakVar's growing support of various standards. Install it with `ov module install vrs_id`. Use it as `ov run input.vcf -a vrs_id`.
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OakVar has updated its `gencode` module, which maps variants to genes and assess their impact on protein sequences, based on the latest GENCODE v46. This update also shows which transcripts are MANE Select and MANS Plus Clinical, so that you can know what molecular consequences the variants make on those clinically relevant transcripts. Also, transcripts are mapped more precisely to UniProt, at the isoform level. Install it with `ov module update gencode`. `gencode` is automatically run with `ov run input.vcf`.
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GWAS Catalog is the biggest collection of SNP-trait associations. We have just published a brand new update of GWAS Catalog module of OakVar. Explore your variants for various traits with OakVar and `gwas_catalog` module. `ov module install gwas_catalog` to install and `ov run input.vcf -a gwas_catalog` to annotate with the module. Great job Gizi Golt!