GlyGen

?? GlyGen Webinar Alert: Biomedical Text Mining Insights! Join the GlyGen Webinar titled "Biomedical Text Mining for Assisting Literature Retrieval and Curation" by Zhiyong Lu, PhD FACMI from The National Institutes of Health. About the Talk: Dr. Lu will present groundbreaking work on developing large-scale, machine-learning based tools for better accessing and analyzing scientific information in biomedical literature. The presentation will showcase their uses in some real-world applications including enhanced PubMed searches, supporting literature data curation d taming COVID-19 pandemic paper tsunami. ?? Date: April 01, 2025 ? Time: 10 AM EST ???Add to Calendar: - Google Calendar: https://lnkd.in/gpgPjkaw - Outlook Calendar: https://lnkd.in/gKWf4a87 #BiomedicalResearch #MachineLearning #TextMining #NIH #glycotime

?? GlyGen Webinar Series - March Session ?? We are excited to announce our upcoming webinar on: Tools To Explore Complex Glycoproteomics Data By Dr. Nicholas M. Riley, PhD from The University of Washington ?? Date: March 11, 2025 ?? Time: 10 AM EST Add to Calendar:? - Google Calendar: https://lnkd.in/gwP8YUtr - Outlook Calendar: https://lnkd.in/g4xQxiDg Dr. Riley will discuss how Glycopeptide tandem MS spectra are complex and often challenging to interpret, even with modern search engines that have significantly improved the ability to assign glycopeptide identifications. He will also discuss several strategies to improve data analysis and highlight several examples of how these tools have subsequently helped refine the methods used to interrogate the glycoproteome. Don't miss this opportunity to gain insights from industry leaders and explore new collaborative possibilities! ?? Also, make sure to check out our January webinar details here: https://wiki.glygen.org/ Stay tuned and join us!

GNOme manuscript published! Exciting News in Glycoscience! We are thrilled to announce the publication of "GNOme, an ontology for glycan naming and subsumption" in the Analytical and Bioanalytical Chemistry special issue "Current Progress in Glycosciences and Glycobioinformatics". Authored by Nathan Edwards, Wenjin Zhang and Michelle Vesser, this work introduces the GlyGen affiliated GNOme project, a novel ontology that organizes glycan structures according to their degree of characterization to facilitate automated reasoning and interactive browsing of GlyTouCan accessions. GNOme can be found at https://gnome.glyomics.org/?and integrated with GlyGen. Key Highlights: * GNOme is part of the OBO Foundry and is integrated with platforms like GlyGen and GlyCosmos. * It simplifies glycan discovery by categorizing structures based on their degree of characterization. * The interactive GNOme Structure Browser provides an intuitive way to explore glycans visually. Reference: Zhang, W., Vesser, M. & Edwards, N. GNOme, an ontology for glycan naming and subsumption. Anal Bioanal Chem (2025). DOI: https://lnkd.in/dhVRUrJn. PMID: https://lnkd.in/dE7Qb8mi. #Glycoscience #Bioinformatics #Ontology #Glycans #ResearchInnovation #glycotime

Join us for an exciting seminar hosted by the Mount Sinai Center for Bioinformatics! Dr. Alexander Lachmann will present the 2025 updates to ARCHS4, a powerful resource for RNA-seq data analysis. ???Feb 27, 2025 ???2–3 PM ET Register here:?https://lnkd.in/gBJuZFMZ #Bioinformatics #RNASeq #ARCHS4 #OmicsTools #ResearchInnovation #glycotime #CFDE

Exciting opportunities ahead for glycoscience enthusiasts! ????? 1. GlycoMIP Scientists on Screen? - Quarterly virtual event showcasing articles about glycomaterials research? - Learn from leading experts in the field? - February 27, 2025: Dr. Gustavo Kashiwagi - HPLC-Based Automated Synthesis and Purification of Carbohydrates 2. GlycoMIP 2025 Summer School @ VT? - 4-day immersive learning experience? - Focus on glycomaterials characterization? - Hands-on lab exercises and networking? - For Undergrad students with a passion for chemistry or biochemistry? - Application deadline: March 7, 2025 Don't miss out on these valuable educational experiences! Whether you're a student, researcher, or professional interested in glycomaterials, these events offer unique opportunities to expand your knowledge and network.? ? For more information and to apply, visit ??: https://lnkd.in/gxiGqRAa? ? #Glycomaterials #ScienceEducation #ResearchOpportunities #glycotime?

Spotlight on GlyGen’s Newest Feature!? ? With our latest 2.7 release, we’re introducing an exciting enhancement to the glycan and protein details pages—full-screen tables for detailed data analysis! Why this feature improves your workflow: ??Maximized viewing space – Get an expansive, distraction-free view of complex datasets.? ??Seamless toggling – Switch to full-screen mode with a click for a more focused experience.? ??Enhanced usability – Effortlessly analyze glycoproteomics data without constraints. ???Where to find this feature:? This enhancement is available in key glycan and protein details page sections, including: - Glycan Details Page: Associated Protein, Biosynthetic Enzymes, Subsumption, and Expression. - Protein Details Page: Glycosylation, Phosphorylation, Single Nucleotide Variation, Mutagenesis, Glycan Ligands, PTM Annotation, Proteoform Annotation, Biomarkers, Expression Tissue and Expression Disease. At GlyGen, we’re committed to making data exploration smoother and more intuitive for researchers. Try out the new full-screen feature and take your analysis to the next level! ??Explore now:?https://glygen.org/home/ ? #GlyGen #Glycomics #Proteomics #DataScience #Bioinformatics #ResearchTools #DataVisualization #glycotime

?? Unlocking the Mysteries of Proteins with AI ?? What if the solution to some of the world’s biggest challenges—curing diseases, combating climate change, or breaking down plastic waste—was hidden in the intricate folds of proteins? This fascinating video dives into the groundbreaking advancements in protein structure prediction, highlighting how AI tools like AlphaFold have revolutionized biology by solving one of science’s most complex puzzles.? With over 200 million protein structures now mapped, this innovation accelerates research in medicine, environmental science, and beyond. A must-watch for anyone passionate about the intersection of biology and technology! ?? Check it out here: https://lnkd.in/g9xy9HA2 #GlyGen #ProteinScience #AI #AlphaFold #BiologyInnovation #glycotime?

?? GlySpace Meeting 2025 - Advancing Glycoinformatics Collaboration ?? The GlyGen team recently participated in the GlySpace Alliance Meeting at Soka University in Hachioji, Japan, from January 13 to 20, 2025. This gathering was a melting pot of ideas, collaborations, and forward-thinking discussions in the field of glycoinformatics. Highlights from the Meeting: - Forging New Partnerships: We explored collaborations with organizations such as the Human Glycome Project, GlycoNet, and MIRAGE, aiming to enhance data sharing and joint research initiatives.? - Advancing Glycan Function Ontology: A dedicated session was held to develop a comprehensive ontology for glycan functions, which will significantly improve data interoperability across various platforms.? - Commitment to Education: Strategies were formulated to promote glycoscience education, including the development of courses, workshops, and outreach materials to engage and inform the scientific community.? - Exploring Funding Opportunities: We identified potential funding sources to support ongoing and future glycoinformatics projects, emphasizing the need for sustained financial backing for collaborative research. A highlight of the event was the symposium on January 17, 2025, at Soka University's Global Square, where members presented on various topics related to the GlySpace Alliance. We extend our heartfelt gratitude to the organizers and participants for their invaluable contributions. The insights gained and partnerships formed during this meeting will undoubtedly propel our collective efforts in glycoscience research to new heights. For more information about the GlySpace Alliance, visit https://www.glyspace.org. #glycotime #Collaboration?

Looking forward to the collaboration!

?? Reminder! Our next GlyGen Webinar is just around the corner! ?? Feb 4, 2025 | ?? 10 AM EST ?? Dr. Parastoo Azadi will share insights on Research, Collaboration, Service & Training at CCRC. ?? Details: wiki.glygen.org Don’t miss it! #glycotime #webinar #collaboration