ATOM Accelerating Therapeutics for Opportunities in Medicine

Amanda Paulson, PhD, UCSF Specialist and ATOM data scientist, recently showcased an exciting poster at #UCSFResearchAIDay —leveraging?Active Learning for in silico design of selective PARP1 inhibitors. This work highlights how AI is #accelerating #drugdiscovery and shaping the next era of #biomedical breakthroughs.

#announcement AMPL Release 1.6.3 resulting from the #UDelATOMHackathon Following the UD-ATOM Hackathon, the ATOM AMPL Developers and Herman S., #mentor for #Team Code Guardians, came together to #integrate Team Code Guardian's Pull Requests that included fixing the code and implementing continuous integration that would benefit AMPL in three ways:??? 1. Increased?developer productivity, 2. Encouraged?new contributors, and 3. Included Ruff Linter into our software development pipeline. ? The AMPL Developers rolled up their sleeves to implement these improvements!? ? #Thankyou to the AMPL Developers, Team Guardians, and Herman Singh!? ? To #learn more about AMPL, follow these links:? AMPL GitHub:?https://bit.ly/2RpcZxr AMPL 1.6.3 Update:?https://lnkd.in/gXgcNzT8 AMPL Tutorials:?https://lnkd.in/gRGM4xAM #partnership Frederick National Laboratory for Cancer Research, AI Center of Excellence at University of Delaware & #dataScienceInstitute, Lawrence Livermore National Laboratory, University of California, San Francisco, MassMatrix, Inc. #teamwork #datascience #machinelearning #AI #students #ATOMHackahon

This summer, our University of California, San Francisco-ATOM #Trainees didn't just learn - they contributed to fast-paced, #cuttingedge #drugdiscovery research in Michelle Arkin's lab at UCSF.? ? Aleah Camacho and Sara Hussin immersed themselves in #experimental work under the #mentorship of Zain Alam and Maryam Pearson. They actively engaged in #designing, executing, and troubleshooting experiments?and?fostering #collaboration with lab colleagues. The analysis and interpretation of their data allowed them to extract meaningful insights from their research.?The summer research program culminated with final presentations where the trainees effectively?communicated?their findings to an audience of scientists, students, and peers?that showcased?their progress and achievements. ? #Thankyou, Aleah and Sara, for making our #inaugural Trainee program memorable! #partnership #nextgeneration #scientist #student #skills #ATOMTrainee #ATOMmentor #datascience

Are you interested in exploring #drugdiscovery, but don't know where to start? Use the #ATOM Modeling PipeLine (AMPL) #Tutorials as a starting point to #explore building a #machinelearning #model from installation to curation to effectively train and evaluate a #ml model to make predictions. Once you complete the tutorials, you will be ready to use your #dataset to solve your drug discovery problem! To?#learn?more about AMPL and the AMPL Tutorials, follow these links: AMPL GitHub:?https://bit.ly/2RpcZxr AMPL Tutorials ReadtheDocs:?https://lnkd.in/gRGM4xAM #partnership Lawrence Livermore National Laboratory Frederick National Laboratory for Cancer Research University of California, San Francisco

#thankyou for hosting ATOM! There were so many AMPL learnings from this group and some amazing outcomes. We can't wait to dig into the details from each problem set.

WOW! #UdelATOMHackathon @ the Fintech Innovation Hub University of Delaware What a vibrant group! ???? So much fun, learning, networking, hacking, presenting and moving the needle in the #drugdiscovery space! And the fooood. Thank you #UDel catering :-) AI Center of Excellence at University of Delaware ATOM Accelerating Therapeutics for Opportunities in Medicine ??

#Introducing the #UDelATOMHackathon #Judges #Thankyou Judges: Chuming Chen, Jodi Hadden-Perilla, Nazim Karaca #ATOMScience #ATOMHackathon #momentinscience #theATOMapproach #teamwork #partnership AI Center of Excellence at University of Delaware & #DataScienceInstitute, Frederick National Laboratory for Cancer Research, Lawrence Livermore National Laboratory, University of California, San Francisco

Another great day in the books! #UDelATOMHackathon

A great second day for the #UDelATOMHackathon. Today we saw the wonderful results when IT professionals, researchers, scientists and students work together on team science challenges! We have open source software improvements, new AI predictive models for drug discovery, applications of generative AI to suggest new molecules, and much excitement and energy! A shout out to the universities joining in this #ATOMHackathon including University of Delaware, Delaware State University, Bowie State University, University of California San Francisco, University of California Berkeley, University of Southern California, Penn State University, and Northeastern University. Also a shout out to NVIDIA and MassMatrix for sending mentors as industry, academia and government join forces to deliver open source solutions for open science. Looking forward to seeing results from Day 3!

Many thanks to our 2024 #UDelATOMHackathon #mentors!? ? We are so incredibly grateful for each mentors support and guidance for their inspiring innovation, sharing their knowledge, fostering growth with their team, and building connections.? ? Let’s make this hackathon an unforgettable experience filled with #innovation, #learning, and #collaboration. #thankyouMentors: Sean Black, Mauricio Ferrato, Vineeth G., Stewart He, Pinyi Lu, Mengmeng Ma, Jessica Mauvais, Kevin McLoughlin, Justin Overhulse, Ph.D., Amanda Paulson, PhD, #HermanSingh, Chloe Thangavelu, PhD, & M Ryan Weil, Ph.D. #partnership Frederick National Laboratory for Cancer Research, NVIDIA, AI Center of Excellence at University of Delaware & #DataScienceInstitute, Lawrence Livermore National Laboratory, University of California, San Francisco, MassMatrix, Inc.