What are some ways to use 3D graphics for biological data visualization?

1 Molecular structures

One of the most common applications of 3D graphics for biological data visualization is to display the molecular structures of proteins, DNA, RNA, and other biomolecules. 3D graphics can help you to explore the shape, size, orientation, and interactions of these molecules, as well as their functions and dynamics. You can use software like PyMOL, VMD, or Chimera to create and manipulate 3D models of molecular structures, and export them as images, videos, or interactive web pages.

2 Cellular networks

Another way to use 3D graphics for biological data visualization is to show the cellular networks that regulate the activities and behaviors of cells. 3D graphics can help you to illustrate the spatial and temporal relationships among different types of cells, such as neurons, immune cells, or cancer cells, as well as their signaling pathways, gene expression, and metabolism. You can use software like Cytoscape, CellDesigner, or BioLayout Express3D to create and analyze 3D graphs of cellular networks, and export them as images, videos, or interactive web pages.

3 Organ systems

A third way to use 3D graphics for biological data visualization is to represent the organ systems that perform the vital functions of living organisms. 3D graphics can help you to visualize the anatomy, physiology, and pathology of organs, such as the brain, heart, liver, or kidney, as well as their interactions with other organs and tissues. You can use software like Blender, Maya, or Unity to create and animate 3D models of organ systems, and export them as images, videos, or interactive web pages.

4 Evolutionary trees

A fourth way to use 3D graphics for biological data visualization is to depict the evolutionary trees that trace the history and diversity of life on Earth. 3D graphics can help you to display the phylogenetic relationships among different species, genera, families, or kingdoms, as well as their morphological, genetic, and ecological traits. You can use software like FigTree, TreeView3D, or iTOL to create and customize 3D trees of life, and export them as images, videos, or interactive web pages.

5 Ecological systems

A fifth way to use 3D graphics for biological data visualization is to demonstrate the ecological systems that describe the interactions between living organisms and their environment. 3D graphics can help you to model the spatial and temporal dynamics of populations, communities, ecosystems, or biomes, as well as their responses to environmental factors, such as climate, resources, or disturbances. You can use software like NetLogo, Gephi, or ArcGIS to create and simulate 3D maps of ecological systems, and export them as images, videos, or interactive web pages.

6 Here’s what else to consider

This is a space to share examples, stories, or insights that don’t fit into any of the previous sections. What else would you like to add?